1. Download the sources.
2. cd into /usr/local and become su.
3. tar -xvzf /home/jeltsch/Documents/staden_linux_2003.0b1.tar.gz (jeltsch is my usename, thus has to be replaced for other users!!!!)
4. Edit your .bashrc file by adding the following two lines to its end:
export STADENROOT=/usr/local/staden_linux_2003.0b1
. $STADENROOT/staden.profile
5. Ready.
I installed today the new Staden package (version 1.4) to my Suse 9. I included the lines:
export STADENROOT=/usr/local/staden-linux-rel-1-4 . $STADENROOT/staden.profile
in my ~/.bashrc file.
After this kprinter broke with the following error:
kprinter: /usr/local/staden-linux-rel-1-4/lib/linux-binaries/libstdc++.so.5: no version information available (required by /opt/kde3/lib/kprinter.so)
Already a while ago I wrote a script, that tries to automatize most of the work involved in getting sequences from our ABI sequencer into a gap4 database. The script is far from perfect and looks like this:
!/bin/sh rm *.seq *.log Log\ file.txt for i in `ls *.ab1`; do echo "Renaming $i" mv $i `echo $i | sed "s/\(.\{27\}\).*/\1\.ab1/"` done ls *.ab1 *.txt > tracefile.list pregap4 -nowin -config /home/jeltsch/bin/pregap4_gap4.conf -fofn tracefile.list gap4 test.0.aux